Package: pcgen 0.2.0

pcgen: Reconstruction of Causal Networks for Data with Random Genetic Effects

Implements the pcgen algorithm, which is a modified version of the standard pc-algorithm, with specific conditional independence tests and modified orientation rules. pcgen extends the approach of Valente et al. (2010) <doi:10.1534/genetics.109.112979> with reconstruction of direct genetic effects.

Authors:Willem Kruijer, Pariya Behrouzi, Maria Xose Rodriguez-Alvarez

pcgen_0.2.0.tar.gz
pcgen_0.2.0.zip(r-4.7)pcgen_0.2.0.zip(r-4.6)pcgen_0.2.0.zip(r-4.5)
pcgen_0.2.0.tgz(r-4.6-any)pcgen_0.2.0.tgz(r-4.5-any)
pcgen_0.2.0.tar.gz(r-4.7-any)pcgen_0.2.0.tar.gz(r-4.6-any)
pcgen_0.2.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
pcgen/json (API)

# Install 'pcgen' in R:
install.packages('pcgen', repos = c('https://pariya.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 209 downloads 7 exports 94 dependencies

Last updated from:21d533258c. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK203
source / vignettesOK211
linux-release-x86_64OK249
macos-release-arm64OK167
macos-oldrel-arm64OK181
windows-develOK151
windows-releaseOK144
windows-oldrelOK136
wasm-releaseOK200

Exports:checkGgencovTestgetResidualspcgenpcgenFastpcgenTestpcRes

Dependencies:abindbackportsbase64encbdsmatrixBHBiocGenericsBiocManagerbootbslibcachemcheckmatecliclueclustercolorspacecorpcorcpp11crayondata.tableDEoptimRdigestenhancerevaluatefarverfastICAfastmapfontawesomeforeignFormulafsgenericsggmggplot2gluegraphgridExtragtablehighrHmischtmlTablehtmltoolshtmlwidgetsigraphisobandjquerylibjsonliteknitrlabelinglatticelifecyclelme4lmtestmagrittrMASSMatrixmemoisemimeminqanlmenloptrnnetpcalgpkgconfigR6rappdirsRBGLrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRcppProgressRdpackreformulasrlangrmarkdownrobustbaserpartrstudioapiS7sassscalessfsmiscsommerstringistringrtinytexvcdvctrsviridisLitewithrxfunyamlzoo